Package: dabestr 2025.3.14

Yishan Mai

dabestr: Data Analysis using Bootstrap-Coupled Estimation

Data Analysis using Bootstrap-Coupled ESTimation. Estimation statistics is a simple framework that avoids the pitfalls of significance testing. It uses familiar statistical concepts: means, mean differences, and error bars. More importantly, it focuses on the effect size of one's experiment/intervention, as opposed to a false dichotomy engendered by P values. An estimation plot has two key features: 1. It presents all datapoints as a swarmplot, which orders each point to display the underlying distribution. 2. It presents the effect size as a bootstrap 95% confidence interval on a separate but aligned axes. Estimation plots are introduced in Ho et al., Nature Methods 2019, 1548-7105. <doi:10.1038/s41592-019-0470-3>. The free-to-view PDF is located at <https://www.nature.com/articles/s41592-019-0470-3.epdf?author_access_token=Euy6APITxsYA3huBKOFBvNRgN0jAjWel9jnR3ZoTv0Pr6zJiJ3AA5aH4989gOJS_dajtNr1Wt17D0fh-t4GFcvqwMYN03qb8C33na_UrCUcGrt-Z0J9aPL6TPSbOxIC-pbHWKUDo2XsUOr3hQmlRew%3D%3D>.

Authors:Joses W. Ho [aut], Kah Seng Lian [aut], Ana Rosa Castillo [aut], Zhuoyu Wang [aut], Jun Yang Liao [aut], Felicia Low [aut], Tayfun Tumkaya [aut], Jonathan Anns [ctb], Yishan Mai [cre, ctb], Sangyu Xu [ctb], Hyungwon Choi [ctb], Adam Claridge-Chang [ctb], ACCLAB [cph, fnd]

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manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
dabestr/json (API)

# Install 'dabestr' in R:
install.packages('dabestr', repos = c('https://acclab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/acclab/dabestr/issues

Pkgdown/docs site:https://acclab.github.io

On CRAN:

Conda:

data-analysisdata-visualizationestimationstatistics

10.23 score 219 stars 246 scripts 536 downloads 16 mentions 10 exports 37 dependencies

Last updated from:7fb4eee98e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK197
source / vignettesOK292
linux-release-x86_64OK192
macos-release-arm64OK203
macos-oldrel-arm64OK240
windows-develOK149
windows-releaseOK143
windows-oldrelOK149
wasm-releaseOK120

Exports:%>%cliffs_deltacohens_dcohens_hdabest_plotforest_plothedges_gloadmean_diffmedian_diff

Dependencies:beeswarmbootbrunnermunzelclicowplotcpp11dplyreffsizefarvergenericsggbeeswarmggplot2ggscigluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerrlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviporviridisLitewithr

Controlling Plot Aesthetics
Getting started | Adjusting Text | Size | Content | Adjusting Visual Elements | Markers | Axes | Palettes | Misc

Last update: 2025-05-08
Started: 2023-09-12

Sample Datasets
Usage

Last update: 2025-05-08
Started: 2025-05-08

Tutorial: Basics
Create dataset for demo | Step 1: Loading Data | Changing statistical parameters | Step 2: Effect sizes | P-values and statistical tests | Step 3: Producing estimation plots | NOTE: Using wide datasets

Last update: 2025-05-08
Started: 2023-09-12

Tutorial: Delta-Delta
Create dataset for demo | Loading Data | Unpaired Data | Specifying Grouping for Comparisons | Paired Data | Connection to ANOVA | Omitting Delta-delta Plot | Other Effect Sizes | Statistics

Last update: 2025-05-08
Started: 2023-09-12

Tutorial: Mini-Meta Delta
Create dataset for demo | Loading Data | Unpaired Data | Paired Data

Last update: 2025-05-08
Started: 2023-09-12

Tutorial: Proportion Plots
Create dataset for demo | Loading Data | Effect sizes | Generating Unpaired Proportional Plots | Generating Sankey plots for paired proportions | Adjustment parameters

Last update: 2025-05-08
Started: 2023-09-12

Tutorial: Repeated Measures
Create dataset for demo | Loading Data

Last update: 2025-05-08
Started: 2023-09-12

Readme and manuals

Help Manual

Help pageTopics
Producing an estimation plotdabest_plot
Calculating effect sizescliffs_delta cohens_d cohens_h effect_size hedges_g mean_diff median_diff
Generates a Forest Plotforest_plot
Loading data with dabestrload
Adjustable Plot Aestheticsplot_kwargs